This function is to get a handset of a set and calculate the kappa

getHandCT(full.ct, handSetLength, handSetBaserate, as_kappa = TRUE)

full.ct | This is the set to take a handset of |
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handSetLength | This is the length of the handset to take |

handSetBaserate | This is the minimum baserate to inflate the handset to |

as_kappa | If FALSE then return the handSet, if TRUE (default) return the kappa of the handSet |

The function returns the handSet if returnSet is TRUE or the kappa of the handSet if not