This function calculates rho and kappa for a given `testSet`

as defined by the file
and columns (col1, col2), and returns a list containing both values. Called by `rho`

.

rho.file(
x,
col1,
col2,
OcSBaserate = NULL,
testSetBaserateInflation = 0,
OcSLength = 10000,
replicates = 800,
ScSKappaThreshold = 0.9,
ScSKappaMin = 0.4,
ScSPrecisionMin = 0.6,
ScSPrecisionMax = 1
)

## Arguments

x |
The observed kappa value, `testSet` or `contingencyTable` that will be tested with rho |

col1 |
The first column from file |

col2 |
The second column from file |

OcSBaserate |
The `baserate` of the observed `codeSet` (defaults to `baserate` of `testSet` or `contingencyTable` ) |

testSetBaserateInflation |
The minimum `baserate` from the sampling procedure |

OcSLength |
The length of the observed `codeSet` |

replicates |
The number of simulated `codeSets` to use in the null hypothesis distribution for rho; similar to replicates in a Monte Carlo study |

ScSKappaThreshold |
The maximum kappa value used to generate simulated `codeSets` in the null hypothesis distribution for rho |

ScSKappaMin |
The minimum kappa value used to generate simulated `codeSets` in the null hypothesis distribution for rho |

ScSPrecisionMin |
The minimum precision to be used for generation of simulated `codeSets` in the null hypothesis distribution for rho |

ScSPrecisionMax |
The maximum precision to be used for generation of simulated `codeSets` in the null hypothesis distribution for rho |

## Value

rho for the given parameters

A list of the format:

- rho
The rho of the `codeSet`

- kappa
The Cohen's Kappa of the `codeSet`

## See also